PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN43161.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 212aa    MW: 23711.9 Da    PI: 9.4857
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN43161.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv  ++q+G g+W++ ++  g+ R++k+c++rw +yl
       KHN43161.1 14 KGPWTAEEDQILVSHIQQYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding50.74e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +++++  lG++ W++Ia+ ++ gRt++++k++w+++l
       KHN43161.1  67 RGKFSKEEEHTILKLHGILGNR-WSAIAASLP-GRTDNEIKNFWHTHL 112
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129417.067961IPR017930Myb domain
SuperFamilySSF466896.7E-3110108IPR009057Homeodomain-like
SMARTSM007172.4E-141363IPR001005SANT/Myb domain
PfamPF002497.0E-161461IPR001005SANT/Myb domain
CDDcd001671.08E-111661No hitNo description
PROSITE profilePS5129425.50462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2565116IPR009057Homeodomain-like
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PfamPF002495.0E-1567112IPR001005SANT/Myb domain
CDDcd001673.23E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTRTPCCERM GLKKGPWTAE EDQILVSHIQ QYGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGKF SKEEEHTILK LHGILGNRWS AIAASLPGRT DNEIKNFWHT HLKKRIQKSG  120
VHNGNASSRI LQEAQANTSL DASSAASSTV TANVMIANYG LPVRNINPPI AGFYGAVSSD  180
TFGEIEDNHG SCQLSEEMEF WYNIFIKSGQ TS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604862.11e-160PREDICTED: myb-related protein Myb4-like
SwissprotQ7XBH43e-73MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLA0A0B2S8Y41e-160A0A0B2S8Y4_GLYSO; Myb-related protein Myb4
TrEMBLI1NCD21e-160I1NCD2_SOYBN; Uncharacterized protein
STRINGGLYMA19G43740.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-70myb domain protein 15
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]